[VoxBo] problem with vb2cub command

[Lila Chrysikou]

hello,

Just so there is a record of this for others experiencing the same problem:

A slightly modified version of Dongbo's suggestion works, if one replaces
all fsl references in a script accordingly.

Specifically, the command that appears to work is:

runonce shellcommand "export
FSLOUTPUTTYPE=ANALYZE;/usr/local/fsl-old/fsl-3.3/bin/bet
Anatomy/Anatomical
Anatomy/Anatomical_BET -f 0.5 -g 0 -o -m"

Notice that you should change usr/local/fsl/bin/ to
usr/local/fsl-old/fsl-3.3/bin/

~Lila

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Evangelia G. Chrysikou, Ph.D.
Post Doctoral Research Fellow
Thompson-Schill Lab

Center for Cognitive Neuroscience
University of Pennsylvania
Office address: 3810 Walnut St.,Room 307, Philadelphia, PA 19104
215. 573.6726  (phone)
215. 898.1982  (fax)
E-mail: evangelg at psych.upenn.edu
http://www.psych.upenn.edu/~evangelg/Home.html
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