[VoxBo] normalizing coronal images

[Daniel Y Kimberg]

Ling Wong wrote:
> I tried normalizing the data and then converting to coronal, but I
> suspect that might be missing somehow (the brains look a little
> flat-topped).  I'd like to try reorienting the template and
> normalizing to that, but vborient does not recognize the .mnc
> extension.  Any ideas?

Sounds like you're using SPM2.  SPM5 has the same templates in nii
format, which vborient does speak.  Although if the normalization is
failing, it's hard to imagine that just reorienting will help.  You
may get some benefit if the origin shifts in the process.

dan