[VoxBo] preprocessing error
Sean MacEvoy
macevoy at psych.upenn.edu
Fri Oct 13 17:17:04 EDT 2006
Hi all,
All of a sudden, I'm having difficulty executing a preprocessing
script (a very slightly modified version of Geoff's) which previously
worked fine. A bad job results from the script line:
runonce shellcommand "/usr/local/fsl/bin/bet Anatomy/Anatomical
Anatomy/Anatomical_BET -f 0.5 -g 0 -o -m"
No error message is logged, although if the portion within the quotes
is executed from the command line (which may or may not be
diagnostic), I'm getting "Environment variable FSLOUTPUTTYPE is not
set!" as an error.
Anyone know what this issue is, and why it would suddenly become a
problem? I've previously successfully preprocessed data with scripts
containing the same command.
Sean
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