vbpermgen

From VoxBoWiki

vbpermgen is both a graphcal and a command-line utility for setting up permutation tests. You must already have a solved VoxBo GLM. Here's the help text:

VoxBo vbpermgen (v1.8.2/Jun  9 2006)
summary: creates permutations on data from a specified glm directory.
usage:
          vbpermgen [flags]
example that loads the GUI:
          vbpermgen
command line example:
          vbpermgen -m glm -d perm -t 1 -c "1 0" -s t -p 0 0 0 -n 10 -a sn -b 2
flags:
          -h help
          -m <matrix stem name>     Specify the matrix stem name. Required.
          -d Permutation directory name. Required.
          -t Permutation type. 0 means no permutation.
            1 means regular permutation.  2 means
            signed permutation. Required.
          -s scale value of stat cubes. Required.
          -c contrast values, in quotes. Required.
          -p pseudoT values, in quotes. Required.
          -v Global VoxBo version number. Optional.
          -n index of permutation to be generated. Optional.
          -a sequence name for the scheduler. Default is glm dir name. Optional.
          -b prioity of sequence. Default is 2. Optional.
scales:
          t            - t value map
          i            - intercept term percent change map
          beta or rb   - raw beta values map
          f            - F value map
          tp tp/1 tp/2 - p map of t values
          fp           - p map for F values
          tz tz/1 tz/2 - Z map of t values
          fz           - Z map for F values
notes:
          /1 and /2 force one tailed and two tailed, and,
          if not indicated, VoxBo assumes one tailed testing.