VoxBo tools most likely to be of use to non-VoxBo users
From VoxBoWiki
This page lists the subset of VoxBo's tools we felt would be most likely to be useful to imagers who don't otherwise use VoxBo. Each tool can be downloaded individually from its own page.
| Tool | Description |
|---|---|
| analyzeinfo | display information about Analyze(tm) format (AVW) files |
| calcgs | calculate the global signal for a 4D time series |
| calcps | calculate the average power spectrum for a 4D time series |
| cub2pngs | convert any 3D volume to a directory of PNG files |
| dcmsplit | remove identifying information from DICOM headers |
| dicominfo | display information about DICOM format files |
| imginfo | display header information for Analyze(TM) files |
| makevlsm | script to carry out a VLSM analysis |
| merge3d | average a series of 3D volumes |
| norm | ancient spatial normalization (warping), based on SPM96 |
| realign | ancient rigid realignment, based on SPM96 |
| resample | utility to resample 3D and 4D volumes in various ways |
| setorigin | utility to set the origin of a volume |
| sliceacq | interpolate 4D time series data to correct for slice acquisition timing |
| vb2vmp | convert a 3D volume to BrainVoyager's VMP format |
| vbbatch | utility for submitting command lines to the VoxBo queue |
| vbcmp | compare pairs of 3D or 4D volumes, show statistics on how they differ |
| vbconv | general-purpose file format conversion utility, converts 3D and 4D volumes based on file extension |
| vbfdr | carry out FDR calculations |
| vbfilter | freqency domain filtering of 4D data files |
| vbhdr | utility to manipulate VoxBo headers in various ways |
| vbi | display information about 1D, 3D, and 4D files |
| vbim | all-purpose multi-function image munger |
| vbinterpolate | interpolate selected volumes from a 4D time series |
| vbmaskcompare | compare two masks using the methods outlined in fiez et al. |
| vbmaskinfo | mysterious unsupported executable |
| vbmaskmunge | utility to perform various manipulations of 3D files (not just masks!) |
| vbmerge4d | create a single 4D file from separate files that include time series from separate spatial locations |
| vborient | utility for changing the orientation of 3D or 4D volumes |
| vboverlap | calculate overlap numbers for a binary mask (e.g., lesion volume) and atlas |
| vbperminfo | tool to derive permutation distributions from existing sets of permutation volumes |
| vbpermvec | utility to permute a vector file |
| vbprep | scripting tool for processing VoxBo processing scripts |
| vbregion | displays various region stats based on a mask |
| vbregress | carries out regression with 4D or 1D data |
| vbrename | sorts DICOM files sensibly |
| vbrender | offline rendering of stat maps |
| vbri | utility for allowing users to rate images |
| vbse | estimates spatial smoothness from a 4D volume using method of kiebel et al. |
| vbshift | shifts a volume in whole voxel increments in x, y, or z, with wrap |
| vbsim | creates volumes of noise for testing |
| vbsmooth | apply Gaussian smoothing to 3D or 4D volumes |
| vbtcalc | graphical interface to generate critical thresholds from RFT or Bonferroni correction |
| vbthresh | thresholds a 4D volume |
| vbtmap | create a t-statistic map for lesion data |
| vbview2 | VoxBo's image viewer |
| vbvolregress | carry out non-autocorrelated regression using arbitrary combination of 1D and 4D files |
| vbxmap | create a chi-squared map for lesion data |
| vbxts | extract time series data from 4D or GLM data |
| vecview | graphical interface to view vectors, matrices, and movement parameters |
