vbdumpstats

vbdumpstats is a command line program for calculating region or voxel stats from a VoxBo GLM you've already run. For regions, it averages the signal in the region and runs a new GLM on that time series (i.e., it doesn't just average statistics in the region). vbdumpstats makes use of the contrasts in your contrasts.txt file.

Here's the help text:

VoxBo vbdumpstats (v1.8.5/Jun 14 2011)
summary: dump stats from one or more VoxBo GLMs
usage:
  vbdumpstats <glmdir> [<flags>]
flags:
  -c <contrast>    name of desired contrast
  -m <maskfile>    mask file for region
  -p <x> <y> <z>   position (coordinate)
  --pca <#>        use nth principal component instead of region mean
  -d               drift correct data (default off)
  -d0              don't drift correct data
  -n               mean norm data (default off)
  -n0              don't mean norm data
  -h               help
  -v               version
notes:
  either -m or -p must be specified

  if -c is omitted, all contrasts in contrasts.txt are used

  option -c can take either a contrast name (to look up in
  contrasts.txt) or a contrast spec of the following form: "<name>
  <scale> vec 1 -1..."