| Tool
| Description
|
| analyzeinfo
| display information about Analyze(tm) format (AVW) files
|
| calcgs
| calculate the global signal for a 4D time series
|
| calcps
| calculate the average power spectrum for a 4D time series
|
| comptraces
| calculate the traces for a regression (used internally)
|
| cub2pngs
| convert any 3D volume to a directory of PNG files
|
| dicominfo
| display information about DICOM format files
|
| ffinfo
| display information about installed VoxBo file formats
|
| gcheck
| diagnostics on design (G) matrices
|
| gds
| script processor for creating G matrices
|
| gdw
| graphical interface for creating G matrices
|
| glm
| graphical interface for setting up a GLM
|
| glminfo
| utility to display information about a GLM directory
|
| idlfree
| hack that returns the number of free IDL licenses
|
| makematk
| make the K matrix (used internally)
|
| makematkg
| make the KG matrix (used internally)
|
| merge3d
| average a series of 3D volumes
|
| norm
| spatial normalization (warping), based on SPM96
|
| realign
| rigid realignment, based on SPM96
|
| resample
| utility to resample 3D and 4D volumes in various ways
|
| setorigin
| utility to set the origin of a volume
|
| sliceacq
| interpolate 4D time series data to correct for slice acquisition timing
|
| sortmvpm
| sort VoxBo movement parameter estimates into separate components
|
| sumrfx
| display simple summaries of the contents of RFX volumes
|
| tes2cub
| extract a 3D volume from a 4D volume
|
| tesjoin
| join two or more tes files previously split using tesplit
|
| tesplit
| split a tes file into one or more pieces
|
| txt2num
| convert a text reference function into its numerical equivalent
|
| vb2cub
| convert a 3D volume to VoxBo CUB format
|
| vb2img
| convert a 3D volume to Analyze format
|
| vb2imgs
| convert a 4D volume to a directory of Analyze format 3D volumes
|
| vb2tes
| convert a 4D volume to VoxBo TES format
|
| vb2vmp
| convert a 3D volume to BrainVoyager's VMP format
|
| vbbatch
| utility for submitting command lines to the VoxBo queue
|
| vbcfx
| convert a text condition function to a numerical vector
|
| vbcmp
| compare pairs of 3D or 4D volumes, show statistics on how they differ
|
| vbconf
| almost useless utility for display bits and pieces of the VoxBo configuration
|
| vbconv
| general-purpose file format conversion utility, converts 3D and 4D volumes based on file extension
|
| vbdumpstats
| display selected voxel or region statistics for a GLM
|
| vbfilter
| freqency domain filtering of 4D data files
|
| vbfit
| fit a 1/f noise model to data
|
| vbhdr
| utility to manipulate VoxBo headers in various ways
|
| vbi
| display information about 1D, 3D, and 4D files
|
| vbimagemunge
| all-purpose multi-function image munger
|
| vbinterpolate
| interpolate selected volumes from a 4D time series
|
| vblock
| internal utility to support file locking
|
| vbmakefilter
| utility to create exogenous filter and intrinsic noise model
|
| vbmakeglm
| script processor for creating GLM analyses
|
| vbmakeresid
| calculate redisuals from an existing GLM
|
| vbmakeregress
| queue up permuted vbvolregress jobs
|
| vbmaskcompare
| compare two masks using the methods outlined in fiez et al.
|
| vbmaskinfo
| mysterious unsupported executable
|
| vbmaskmunge
| utility to perform various manipulations of 3D files (not just masks!)
|
| vbmerg4d
| create a single 4D file from separate files that include time series from separate spatial locations
|
| vbmm2
| voxbo matrix manipulation utility, mostly used internally for GLMs
|
| vbmunge
| simple 3D munging utility
|
| vborient
| utility for changing the orientation of 3D or 4D volumes
|
| vboverlap
| calculate overlap numbers for a binary mask (e.g., lesion volume) and atlas
|
| vbpermgen
| graphical interface for setting up a permutation test with an existing GLM
|
| vbperminfo
| tool to derive permutation distributions from existing sets of permutation volumes
|
| vbpermmat
| internal tool to generate a matrix of randomly generated permutations
|
| vbprefs
| display user prefs, sets your email address
|
| vbtmap
| create a welch's t-statistic map for lesion data
|
| vbprep
| scripting tool for processing VoxBo processing scripts
|
| vbqa
| quality-assurance tool, generates HTML reports
|
| vbregion
| displays various region stats based on a mask
|
| vbregress
| carries out regression with 4D or 1D data
|
| vbrename
| sorts DICOM files sensibly
|
| vbrender
| offline rendering of stat maps
|
| vbse
| estimates spatial smoothness from a 4D volume using method of kiebel et al.
|
| vbshift
| shifts a volume in whole voxel increments in x, y, or z, with wrap
|
| vbsim
| creates volumes of noise for testing
|
| vbsingle
| interpreter for VoxBo's Single-user mode
|
| vbsmooth
| apply Gaussian smoothing to 3D or 4D volumes
|
| vbsrvd
| the VoxBo server executable (used internally)
|
| vbstatmap
| creates stat maps from GLM directories
|
| vbsubmit
| submit a fully-formed sequence directory to the queue (used internally)
|
| vbtcalc
| graphical interface to generate critical thresholds from RFT or Bonferroni correction
|
| vbthresh
| thresholds a 4D volume
|
| vbvec2hdr
| takes a vector and puts the values in the header of an image file
|
| vbview
| VoxBo's image viewer
|
| vecregress
| use VoxBo's regression code with 1D vectors instead of a 4D series
|
| vbvolregress
| carry out non-autocorrelated regression using arbitrary combination of 1D and 4D files
|
| vbxts
| extract time series data from 4D or GLM data
|
| vecsplit
| chop up a vector of motion correction parameters
|
| vecview
| graphical interface to view vectors, matrices, and movement parameters
|
| voxbo
| the VoxBo scheduler
|
| voxq
| query and manipulate the VoxBo queue
|
