All VoxBo tools
From VoxBoWiki
| Tool | Description |
|---|---|
| analyzeinfo | display information about Analyze(tm) format (AVW) files |
| calcgs | calculate the global signal for a 4D time series |
| calcps | calculate the average power spectrum for a 4D time series |
| comptraces | calculate the traces for a regression (used internally) |
| cub2pngs | convert any 3D volume to a directory of PNG files |
| dcmsplit | remove identifying information from DICOM headers |
| dicominfo | display information about DICOM format files |
| ffinfo | display information about installed VoxBo file formats |
| gcheck | diagnostics on design (G) matrices |
| gds | script processor for creating G matrices |
| gdw | graphical interface for creating G matrices |
| glm | graphical interface for setting up a GLM |
| glminfo | utility to display information about a GLM directory |
| imginfo | display header information for Analyze(TM) files |
| idlfree | hack that returns the number of free IDL licenses |
| makematk | make the K matrix (used internally) |
| makematkg | make the KG matrix (used internally) |
| makevlsm | script to carry out a VLSM analysis |
| merge3d | average a series of 3D volumes |
| norm | spatial normalization (warping), based on SPM96 |
| realign | rigid realignment, based on SPM96 |
| resample | utility to resample 3D and 4D volumes in various ways |
| setorigin | utility to set the origin of a volume |
| sliceacq | interpolate 4D time series data to correct for slice acquisition timing |
| sortmvpm | sort VoxBo movement parameter estimates into separate components |
| sumrfx | display simple summaries of the contents of RFX volumes |
| tesjoin | join two or more tes files previously split using tesplit |
| tesplit | split a tes file into one or more pieces |
| txt2num | convert a text reference function into its numerical equivalent |
| vb2vmp | convert a 3D volume to BrainVoyager's VMP format |
| vbbatch | utility for submitting command lines to the VoxBo queue |
| vbcfx | convert a text condition function to a numerical vector |
| vbcmp | compare pairs of 3D or 4D volumes, show statistics on how they differ |
| vbconv | general-purpose file format conversion utility, converts 3D and 4D volumes based on file extension |
| vbdumpstats | display selected voxel or region statistics for a GLM |
| vbfdr | carry out FDR calculations |
| vbfilter | freqency domain filtering of 4D data files |
| vbfit | fit a 1/f noise model to data |
| vbhdr | utility to manipulate VoxBo headers in various ways |
| vbi | display information about 1D, 3D, and 4D files |
| vbim | all-purpose multi-function image munger |
| vbinterpolate | interpolate selected volumes from a 4D time series |
| vblock | internal utility to support file locking |
| vbmakefilter | utility to create exogenous filter and intrinsic noise model |
| vbmakeglm | script processor for creating GLM analyses |
| vbmakeregress | queue up permuted vbvolregress jobs |
| vbmakeresid | calculate redisuals from an existing GLM |
| vbmaskcompare | compare two masks using the methods outlined in fiez et al. |
| vbmaskinfo | mysterious unsupported executable |
| vbmaskmunge | utility to perform various manipulations of 3D files (not just masks!) |
| vbmerg4d | create a single 4D file from separate files that include time series from separate spatial locations |
| vbmm2 | voxbo matrix manipulation utility, mostly used internally for GLMs |
| vborient | utility for changing the orientation of 3D or 4D volumes |
| vboverlap | calculate overlap numbers for a binary mask (e.g., lesion volume) and atlas |
| vbpermgen | graphical interface for setting up a permutation test with an existing GLM |
| vbperminfo | tool to derive permutation distributions from existing sets of permutation volumes |
| vbpermmat | internal tool to generate a matrix of randomly generated permutations |
| vbpermvec | utility to permute a vector file |
| vbprefs | display user prefs, sets your email address |
| vbprep | scripting tool for processing VoxBo processing scripts |
| vbqa | quality-assurance tool, generates HTML reports |
| vbregion | displays various region stats based on a mask |
| vbregress | carries out regression with 4D or 1D data |
| vbrename | sorts DICOM files sensibly |
| vbrender | offline rendering of stat maps |
| vbri | utility for allowing users to rate images |
| vbscoregen | generate simulated behavioral data based on a model of a lesion-behavior relationship |
| vbse | estimates spatial smoothness from a 4D volume using method of kiebel et al. |
| vbshift | shifts a volume in whole voxel increments in x, y, or z, with wrap |
| vbsim | creates volumes of noise for testing |
| vbsmooth | apply Gaussian smoothing to 3D or 4D volumes |
| vbsrvd | the VoxBo server executable (used internally) |
| vbstatmap | creates stat maps from GLM directories |
| vbtcalc | graphical interface to generate critical thresholds from RFT or Bonferroni correction |
| vbthresh | thresholds a 4D volume |
| vbtmap | create a t-statistic map for lesion data |
| vbvec2hdr | takes a vector and puts the values in the header of an image file |
| vbview2 | VoxBo's image viewer |
| vbvolregress | carry out non-autocorrelated regression using arbitrary combination of 1D and 4D files |
| vbxmap | create a chi-squared map for lesion data |
| vbxts | extract time series data from 4D or GLM data |
| vecsplit | chop up a vector of motion correction parameters |
| vecview | graphical interface to view vectors, matrices, and movement parameters |
| voxbo | the VoxBo scheduler |
| voxq | query and manipulate the VoxBo queue |
